Self-Explainable GNN Improves Multi-Label Classification and Attribution

Yingqi Feng, Yufei Tang, Min Shi, Xingquan Zhu· August 31, 2026 View original

Key takeaways

  • Multi-label graph learning needs integrated interpretability.
  • SEMGNN is an end-to-end self-explainable multi-label GNN.
  • It jointly learns classification and label-conditioned edge explanations.
  • Label-label correlations improve both prediction and explanation fidelity.

Who benefits

Social MediaLife SciencesCybersecurityFinanceE-commerce

Summary

SEMGNN is a new self-explainable multi-label Graph Neural Network that simultaneously classifies multi-labeled nodes and identifies contributing edges for each predicted label. Unlike post-hoc explainers, it integrates label-label correlations during training to provide more faithful and compact label-conditioned explanations.

This paper introduces the Self-Explainable Multi-Label Graph Neural Network (SEMGNN), an innovative approach that addresses the complexities of multi-label graph learning. In real-world scenarios, entities often belong to multiple categories or possess multiple attributes, and existing graph learning methods typically lack integrated interpretability. While post-hoc explainers exist, they often fail to adequately model how evidence should be shared or separated across correlated labels. SEMGNN overcomes these limitations by jointly learning a predictor and a sparse edge-mask explainer within a single, unified framework. This end-to-end design allows the model to not only classify multi-labeled nodes but also to identify the specific edges that significantly contribute to each predicted label. By explicitly incorporating label-label correlations, SEMGNN enhances both the accuracy of multi-label node classification and the fidelity of individual label explanations, ensuring that distinct yet coherent structural evidence supports each label. Experiments on synthetic and real-world datasets across various domains demonstrate SEMGNN's competitive predictive performance and its ability to provide more faithful and compact label-conditioned explanations.

Why it matters

Professionals needing to understand why a multi-label graph model makes certain predictions can use SEMGNN to gain crucial insights, improving trust, debugging, and decision-making in complex networked data applications.

How to implement this in your domain

  1. 1Adopt SEMGNN for multi-label classification tasks on graph-structured data where interpretability is critical.
  2. 2Integrate label-label correlation modeling into existing graph neural network architectures for improved performance and explainability.
  3. 3Develop visualization tools to effectively present the label-conditioned edge explanations generated by SEMGNN.
  4. 4Apply SEMGNN in domains like social network analysis, drug discovery, or fraud detection where understanding multi-faceted relationships is key.

Original post by Yingqi Feng, Yufei Tang, Min Shi, Xingquan Zhu

"arXiv:2608.27574v1 Announce Type: new Abstract: Multi-label graph learning intends to capture the intrinsic complexity of real-world applications, where one sample is often related to multiple groups or consists of multiple objects. To date, a handful of multi-label graph learnin…"

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