FedEHR-Agents Boosts Automated EHR Modeling with Federated AI

Jun Bai, Ruilin Wang, Yue Li· August 31, 2026 View original

Key takeaways

  • FedEHR-Agents enables privacy-preserving, collaborative EHR modeling across hospitals.
  • It federates "clinical modeling experience" rather than just model parameters.
  • Autonomous agents refine local experience through memory and prompt refinement.
  • The framework consistently outperforms traditional federated and local baselines.

Who benefits

HealthcarePharmaceuticalsMedical ResearchData PrivacyAI Ethics

Summary

This paper introduces FedEHR-Agents, a federated agentic optimization framework for automated EHR modeling that allows hospitals to collaboratively refine clinical modeling experience while preserving data privacy. It outperforms baselines across diverse clinical prediction tasks by aggregating and distilling "experience" rather than just model parameters.

The rise of large language models (LLMs) is enabling autonomous clinical agents to automate complex Electronic Health Record (EHR) modeling workflows. However, individual hospitals face limitations due to institution-specific data and environments, while direct data sharing across hospitals is restricted by patient privacy concerns. Federated Learning (FL) offers a privacy-preserving solution, but existing FL approaches are typically "model-centric," only federating prediction models or their updates. This research proposes FedEHR-Agents, an "experience-centric" federated agentic optimization framework. Each hospital deploys an autonomous clinical EHR agent that refines its local modeling experience through historical memory, task-specific evaluation, and prompt refinement. A central federated server then aggregates this "experience" across hospitals, distilling it into global meta-prompts for further local refinement. Experiments on multi-hospital EHR benchmarks demonstrate that FedEHR-Agents consistently outperforms both local and traditional federated baselines across various clinical prediction tasks, proving robust across different federation scales and LLM backbones. This highlights clinical modeling experience as a valuable collaborative object beyond conventional parameter-centric FL.

Why it matters

Healthcare professionals, AI developers, and data privacy officers can leverage FedEHR-Agents to build more robust, collaborative, and privacy-preserving AI systems for clinical decision support and research across multiple institutions.

How to implement this in your domain

  1. 1Evaluate existing EHR modeling workflows for opportunities to integrate autonomous agents.
  2. 2Investigate the FedEHR-Agents framework for privacy-preserving multi-institutional AI collaboration.
  3. 3Pilot the deployment of local clinical EHR agents that refine modeling experience.
  4. 4Establish secure federated servers for aggregating and distilling agentic experience.
  5. 5Collaborate with legal and compliance teams to ensure adherence to data privacy regulations (e.g., HIPAA).

Original post by Jun Bai, Ruilin Wang, Yue Li

"arXiv:2608.27856v1 Announce Type: new Abstract: Recent advances in large language models are enabling autonomous clinical agents to perform increasingly complex electronic health record (EHR) modeling workflows. However, agents deployed at individual hospitals remain constrained…"

View on X

Originally posted by Jun Bai, Ruilin Wang, Yue Li on X · view source

Want to go deeper?

Turn these trends into skills with Learnijoy's hands-on AI & tech courses.

Explore courses