SinkSLOT Speeds Up Optimal Transport for Large Datasets

Ian Hsieh, Soumya Snigdha Kundu, Tom Vercauteren, Reuben Dorent· August 31, 2026 View original

Key takeaways

  • Standard Entropic Optimal Transport (EOT) methods are computationally intensive for large datasets.
  • SinkSLOT offers a sparse, lifted optimal transport approach for EOT.
  • It significantly reduces computational complexity to $O(LN)$ per iteration.
  • SinkSLOT outperforms state-of-the-art methods in speed and is applicable in gradient flow.

Who benefits

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Summary

Researchers introduce SinkSLOT, a new algorithm for entropic optimal transport that addresses the computational limitations of the standard Sinkhorn-Knopp algorithm. SinkSLOT achieves substantial speedups on large datasets by using sparse lifted optimal transport and a non-independent prior coupling.

Entropic Optimal Transport (EOT) is a powerful tool for comparing probability distributions, offering a computationally feasible approximation to exact optimal transport. However, the widely used Sinkhorn-Knopp algorithm faces two main challenges: its quadratic computational complexity ($O(N^2)$ per iteration) limits its application to very large datasets, and its use of an independent coupling as a reference measure can lead to assigning mass to high-cost transport edges. A new method called SinkSLOT (Sinkhorn via Sparse Lifted Optimal Transport) has been proposed to overcome these limitations. SinkSLOT introduces the concept of an expected sliced lifted transport plan, which naturally sparsifies the Gibbs kernel using a non-independent prior coupling. This approach significantly reduces the computational burden. The researchers prove that SinkSLOT converges and that each sparse Sinkhorn iteration costs only $O(LN)$, where $L$ is the number of slices, making it much more efficient for large datasets. Furthermore, the resulting objective is a divergence that does not require debiasing. Experimental results on synthetic benchmarks demonstrate that SinkSLOT provides substantial speedups compared to existing dense and sparse EOT methods, and its applicability is shown in a gradient flow experiment.

Why it matters

Data scientists and machine learning engineers working with large-scale datasets and requiring efficient comparison of distributions (e.g., in generative models, domain adaptation, or clustering) can leverage SinkSLOT for faster and more scalable optimal transport computations.

How to implement this in your domain

  1. 1Explore SinkSLOT for applications involving large-scale optimal transport, such as generative modeling or domain adaptation.
  2. 2Integrate the provided code into existing machine learning pipelines.
  3. 3Benchmark SinkSLOT against current EOT methods to assess performance gains on specific datasets.
  4. 4Consider using SinkSLOT for tasks requiring efficient divergence calculations between distributions.
  5. 5Evaluate the impact of the number of slices ($L$) on computational efficiency and accuracy for different problem sizes.

Original post by Ian Hsieh, Soumya Snigdha Kundu, Tom Vercauteren, Reuben Dorent

"arXiv:2608.28262v1 Announce Type: new Abstract: Entropic optimal transport (EOT) has been shown to offer a computationally tractable approximation to exact optimal transport. However, the standard Sinkhorn-Knopp algorithm has two main limitations. First, given discrete measures w…"

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Originally posted by Ian Hsieh, Soumya Snigdha Kundu, Tom Vercauteren, Reuben Dorent on X · view source

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