Frugal Bayesian Optimization Offers Scalable, Efficient Surrogates

Panagiotis Krokidas, Christoforos Rekatsinas, Vassilis Sioros, Grigorios M. Chatziathanasiou, Efi-Maria Papia, George Giannakopoulos· August 3, 2026 View original

Key takeaways

  • Gaussian Processes in BO are often computationally expensive without superior performance.
  • Scalable surrogates like Random Forests offer comparable or better results at lower cost.
  • FruBO provides a framework to recommend efficient BO surrogates based on dataset characteristics.
  • This enables more frugal and accessible optimization for data-limited discovery.

Who benefits

Materials ScienceRoboticsChemistryMachine LearningPharmaceuticals

Summary

Researchers conducted a compute-aware study of Bayesian Optimization (BO), revealing that Gaussian Processes often incur high costs without superior performance. They introduce FruBO, a framework that recommends scalable surrogates like Random Forests, achieving equal or better optimization at a fraction of the computational cost.

This paper introduces "Frugal Bayesian Optimization" (FruBO), a systematic and compute-aware study that re-evaluates the efficiency of Bayesian Optimization (BO) surrogate models. BO is widely used for data-efficient optimization in scientific and engineering fields, but its computational cost is often overlooked. The research benchmarks four surrogate models—Gaussian Processes, Random Forests, NGBoost, and Bayesian Adaptive Spline Surfaces—across eight benchmark functions and nine real-world datasets from diverse domains. The study's key finding is that Gaussian Process-based BO, despite its popularity, consistently incurs the highest time and memory overhead without delivering superior optimization quality or sample efficiency. In contrast, more scalable alternatives, particularly Random Forests, achieve comparable or even better performance while being significantly more computationally frugal. Motivated by these results, the researchers developed a surrogate-recommendation framework within FruBO. This framework predicts the most suitable BO surrogate based on inexpensive dataset characteristics, providing practical guidance for selecting the best model under limited computational and experimental budgets. FruBO establishes a reproducible, compute-aware baseline for BO, enabling more efficient and accessible optimization in various applications.

Why it matters

Professionals in R&D, machine learning engineering, and scientific discovery can leverage FruBO to optimize experiments and model tuning more efficiently, reducing computational costs and accelerating the discovery process, especially with limited data and resources.

How to implement this in your domain

  1. 1Re-evaluate current Bayesian Optimization strategies for computational efficiency and performance.
  2. 2Consider replacing Gaussian Processes with more scalable surrogates like Random Forests or NGBoost in BO pipelines.
  3. 3Utilize FruBO's surrogate-recommendation framework to select the most appropriate model for specific datasets.
  4. 4Apply frugal BO techniques to optimize experimental design, hyperparameter tuning, or material discovery processes.

Original post by Panagiotis Krokidas, Christoforos Rekatsinas, Vassilis Sioros, Grigorios M. Chatziathanasiou, Efi-Maria Papia, George Giannakopoulos

"arXiv:2607.29225v1 Announce Type: new Abstract: Bayesian Optimization (BO) is widely adopted for data-efficient optimization in scientific and engineering applications, yet its computational cost is rarely evaluated alongside optimization performance. Here we present a systematic…"

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Originally posted by Panagiotis Krokidas, Christoforos Rekatsinas, Vassilis Sioros, Grigorios M. Chatziathanasiou, Efi-Maria Papia, George Giannakopoulos on X · view source

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